rs252253689 SNP Detail

Summary

• ID
  rs252253689
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85393681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC TGGCTTCATA ACACCTCCTC
  T
  ACCTGAGAAG CAGAGGGGCT CTGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322751249	CHEV_8_87190951	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252253689					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85393681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20704	CpG island 20704	1481 bp distal
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	within coordinates
Rr368566	regulatory region 368566	1894 bp downstream
Rr666567	regulatory region 666567	1908 bp distal
Rr666568	regulatory region 666568	1033 bp distal
Rr666569	regulatory region 666569	1078 bp proximal
Tssr2627	transcription start site region 2627	1914 bp downstream