rs252260584 SNP Detail

Summary

• ID
  rs252260584
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:30853243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGGCAG AGTGAATTAT
  CTCCCCACAT ATTTAGATGT ATTTGGAGCT GTGGGCAATA CAGTATAAGG GACCTGGCCA
  CCTTTCCCCG TGTCAGCAAG GCAACTGGCA GAGCTGTGCA TCAGAAGACA GACTGGTGAA
  GTACTTCCTC CCATAGGAAA CGAGAAATGT AGTGGTATTG AATCCATTTT ACTTTCCTGG
  W
  AGTAGCCTCT CACTACCCCC ACTATGCTCA GAAGCAAGCA ACAAAACAAC CTTGACCAGG
  TGGCATTTTT AAAGTTCTGA AGTGCTCCTA ATGGACAGCG TGATTCCAGT ATGACTTTCC
  TACCTCTCAC TTTGTATTTG ACCATTAAAG GCTTTGGAAC CTTCCCACAA ACCTCTTTTA
  ACACTGCCAG GTTTGTACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377091433	MGP_WTSI_9_30749532	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	A	T	T	T	A	T	T	T	T	A	A	T	T	T	T	A	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252260584					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	A	T	T	T	A	T	T	T	T	A	A	T	T	T	T	A	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377091433	MGP_WTSI_9_30749532	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:30853243 () rs orientation: forward

Symbol	Name	Function Class
Adamts8	ADAM metallopeptidase with thrombospondin type 1 motif 8	615 bp upstream
Cpgi21523	CpG island 21523	311 bp proximal
Gm10700	predicted gene 10700	within coordinates
Gm69354	predicted gene, 69354	within coordinates
Rr675918	regulatory region 675918	1161 bp distal
Rr675919	regulatory region 675919	1413 bp distal
Rr675920	regulatory region 675920	125 bp proximal
Tssr84208	transcription start site region 84208	594 bp upstream