rs252263423 SNP Detail

Summary

• ID
  rs252263423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34155317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCATTC TGCAGATGAG
  GAGCTTGAGG CGACTCACCC AAGGTCATTC GGAGGAGACA ACTTTTGCTC TTGTGCGTTT
  TTTTCCTCCT CCACAGCACA AATGAAGTTG GAAACGGTGT GGTGCTTGTC GCCCGACTCT
  GACAGCCTAG TGGGCTCTGA AGCTGCCCAG GGAGGGCTCT AGTTGGGTGC CTTCTCAGCC
  Y
  GGCGCAGGAT GACCTGCTTG CATAGGCAGT GTCCTGGTGT CTCTGTCCAG CTCTTTGACT
  TAGCACCAGG CTAGGTGGAG TAGGCAAGAG ACCCTTTGGA AACTGGGGGA ACCAAGGGCT
  GACCAGCACT GGTCTGGCCT AGGCTGTATT GTGGACCTTT GTTTCAGGTT GTGAAGGTAG
  CAGGTGTTTA CGCCAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364490775	MGP_WTSI_5_34340622	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252263423					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364490775	MGP_WTSI_5_34340622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34155317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15746	CpG island 15746	within coordinates
Nat8l	N-acetyltransferase 8-like	within coordinates
Rr609649	regulatory region 609649	1979 bp distal
Rr609650	regulatory region 609650	1563 bp proximal
Tssr1458	transcription start site region 1458	1183 bp downstream
Tssr45846	transcription start site region 45846	1943 bp downstream
Tssr45847	transcription start site region 45847	1912 bp downstream
Tssr45848	transcription start site region 45848	1862 bp downstream
Tssr45849	transcription start site region 45849	1836 bp downstream
Tssr45850	transcription start site region 45850	1549 bp downstream
Tssr45851	transcription start site region 45851	1379 bp downstream
Tssr45852	transcription start site region 45852	1341 bp downstream
Tssr45853	transcription start site region 45853	1283 bp downstream
Tssr45854	transcription start site region 45854	1244 bp downstream
Tssr45855	transcription start site region 45855	1228 bp downstream
Tssr45856	transcription start site region 45856	1210 bp downstream
Tssr45857	transcription start site region 45857	1192 bp downstream
Tssr50625	transcription start site region 50625	1425 bp upstream
Tssr50626	transcription start site region 50626	384 bp upstream