rs252274574 SNP Detail

Summary

• ID
  rs252274574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC CAATTTTCTC TAGCCTTACT
  R
  AACTCATATA CATAAATTAT ATATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss642553310	FVB_NJ_10_90544359	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	A	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	A	A	G	A	G	G	A	A	A	A	A	G	G	A	A	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs252274574					SNP	G	A	G	A	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	A	A	G	A	G	G	A	A	A	A	A	G	G	A	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss642553310	FVB_NJ_10_90544359	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917476 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	569 bp proximal
Ikbip	IKBKB interacting protein	1326 bp upstream
Rr402144	regulatory region 402144	1240 bp upstream
Rr436975	regulatory region 436975	1829 bp distal
Rr436976	regulatory region 436976	121 bp proximal
Rr436977	regulatory region 436977	805 bp proximal
Tssr95222	transcription start site region 95222	477 bp upstream
Tssr95223	transcription start site region 95223	1410 bp upstream
Tssr95224	transcription start site region 95224	1422 bp upstream
Tssr95225	transcription start site region 95225	1467 bp upstream
Tssr98900	transcription start site region 98900	942 bp downstream
Tssr98901	transcription start site region 98901	1039 bp downstream
Tssr98902	transcription start site region 98902	1069 bp downstream
Tssr98903	transcription start site region 98903	1090 bp downstream
Tssr98904	transcription start site region 98904	1169 bp downstream