About   Help   FAQ
rs252274928 SNP Detail
Summary
  • ID
    rs252274928
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:103061859 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCCGCCCCC TCCGCCGCAG
    GTGCACTGCT CGGCAGCCCC CAGCCGGCGC GCCATGGCTG CGGAGGACCC CCGGCCGTCG
    CCCGCGCCCG CCCCCTCCCT GCAGCCCGCC CCCCTGGGGC CGGGTGCGCG GCGGAGAACT
    GCGGTTTGCG CGCACCGGGA GCGGCAGCAG AAGTTCGAAA ATCGCCGAGG GGGGAGCCCG
    Y
    GCCGCAGCTT CCTGCCCCCG GCCCAGCCCT CTGGCCCCGG CCGCCTGCAA CCCTACTTCC
    TCCCCGAGCC TCGGTCGCCG CCCGCTCCCT CGGACGGGGC CGCCGCGATG GGACGCCGCG
    CCCCGGCCCC TGCACGCCGC TGAGCCGAGA GCCACCTAGC CAAGCCTCGC CACACAGCGC
    TGCCCTTCGC TTCCAGGCTC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384517808 MGP_WTSI_11_103032347 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252274928 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss384517808 MGP_WTSI_11_103032347 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:103061859 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi3957 CpG island 3957 within coordinates
Fmnl1 formin-like 1 74 bp upstream
Gm51919 predicted gene, 51919 523 bp upstream
Rr403012 regulatory region 403012 1939 bp downstream
Rr457537 regulatory region 457537 1785 bp distal
Rr457538 regulatory region 457538 771 bp distal
Rr457539 regulatory region 457539 within coordinates
Rr457540 regulatory region 457540 95 bp distal
Rr457541 regulatory region 457541 888 bp proximal
Tssr105316 transcription start site region 105316 606 bp downstream
Tssr105317 transcription start site region 105317 537 bp downstream
Tssr105318 transcription start site region 105318 293 bp downstream
Tssr105319 transcription start site region 105319 203 bp downstream
Tssr105320 transcription start site region 105320 172 bp downstream
Tssr105321 transcription start site region 105321 55 bp downstream
Tssr105322 transcription start site region 105322 24 bp downstream
Tssr105323 transcription start site region 105323 48 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory