rs252274928 SNP Detail

Summary

• ID
  rs252274928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:103061859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGCCCCC TCCGCCGCAG
  GTGCACTGCT CGGCAGCCCC CAGCCGGCGC GCCATGGCTG CGGAGGACCC CCGGCCGTCG
  CCCGCGCCCG CCCCCTCCCT GCAGCCCGCC CCCCTGGGGC CGGGTGCGCG GCGGAGAACT
  GCGGTTTGCG CGCACCGGGA GCGGCAGCAG AAGTTCGAAA ATCGCCGAGG GGGGAGCCCG
  Y
  GCCGCAGCTT CCTGCCCCCG GCCCAGCCCT CTGGCCCCGG CCGCCTGCAA CCCTACTTCC
  TCCCCGAGCC TCGGTCGCCG CCCGCTCCCT CGGACGGGGC CGCCGCGATG GGACGCCGCG
  CCCCGGCCCC TGCACGCCGC TGAGCCGAGA GCCACCTAGC CAAGCCTCGC CACACAGCGC
  TGCCCTTCGC TTCCAGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384517808	MGP_WTSI_11_103032347	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252274928					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384517808	MGP_WTSI_11_103032347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103061859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	within coordinates
Fmnl1	formin-like 1	mRNA-UTR
Gm51919	predicted gene, 51919	523 bp upstream
Rr403012	regulatory region 403012	1939 bp downstream
Rr457537	regulatory region 457537	1785 bp distal
Rr457538	regulatory region 457538	771 bp distal
Rr457539	regulatory region 457539	within coordinates
Rr457540	regulatory region 457540	95 bp distal
Rr457541	regulatory region 457541	888 bp proximal
Tssr105316	transcription start site region 105316	606 bp downstream
Tssr105317	transcription start site region 105317	537 bp downstream
Tssr105318	transcription start site region 105318	293 bp downstream
Tssr105319	transcription start site region 105319	203 bp downstream
Tssr105320	transcription start site region 105320	172 bp downstream
Tssr105321	transcription start site region 105321	55 bp downstream
Tssr105322	transcription start site region 105322	24 bp downstream
Tssr105323	transcription start site region 105323	48 bp upstream