rs252275895 SNP Detail

Summary

• ID
  rs252275895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58662126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAATGTC CACCCAATAT
  ACCTGCTGCA ATAGAAATAT CAGGAATTTC ATTCCCACGG TGGTCTGAAG CCAAGAGTAA
  GCTTGAGCAA GGACTCCATA CTCATTAGAG ACTAGGTTTT GGTCATAGCA TTGGGGTTAA
  CACGATAGTT ATTACTCAGG TCAAGAAGAG AACTTAGCAA ATCTTCAAAT ACGTTAATCA
  R
  CAGTGAATAA GGAGCCTGGA TTATTTCCCT GTGTGGTGTG TCTCTCCCAT CAGAACATGT
  TCCGAGTGGA GAGTGTGAAC TGCATCTGTG TGGACTGGAA AGGCGGTTCC CGAACGACAT
  ATACCCAGGC TACCCAGAAC GTCCGGGTCG TGGGGGCAGA AGTGGCATTG TTGGTTAACG
  TTCTGCAGGT AACTGACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402923774	MGP_WTSI_19_58748184	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252275895					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402923774	MGP_WTSI_19_58748184	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58662126 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	875 bp proximal
Tssr5571	transcription start site region 5571	567 bp downstream
Tssr157263	transcription start site region 157263	1973 bp downstream
Tssr157264	transcription start site region 157264	1915 bp downstream
Tssr157265	transcription start site region 157265	1863 bp downstream
Tssr157266	transcription start site region 157266	609 bp downstream
Tssr157267	transcription start site region 157267	590 bp downstream
Tssr157268	transcription start site region 157268	536 bp downstream
Tssr157269	transcription start site region 157269	47 bp upstream
Tssr157270	transcription start site region 157270	110 bp upstream
Tssr157271	transcription start site region 157271	1362 bp upstream
Tssr157272	transcription start site region 157272	1373 bp upstream
Tssr159957	transcription start site region 159957	1955 bp upstream
Tssr159958	transcription start site region 159958	1828 bp upstream
Tssr159959	transcription start site region 159959	557 bp upstream
Tssr159960	transcription start site region 159960	509 bp upstream
Tssr159961	transcription start site region 159961	1454 bp downstream