rs252280378 SNP Detail

Summary

• ID
  rs252280378
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:67144490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGAGAA GGAGAAGAGC
  GAGCTGAAGA TGGAGATCGA TGATCTCGCT AGTAACATGG AGACAGTCTC CAAAGCCAAG
  GTCTTTCCTA ACTTCCTAAA TTATCTGAAA TACATGAAAG TGATTATATA CTCTGTGGGA
  CTCTAGCTAG CCACACTATA CATCACCCAA GATCTCTGAT TGACATCACT GTATTAAATG
  S
  AACCTCTCAA GGTTCCACAT CTTATTTTTC AAAATCACCT TAAACATTGT TGCTATAGCT
  ACGGCAATAG TAATGCAGTG GCAAGTAAAA GTCCCCTCTA TATGATGTGG GCCATAAATG
  ATGTTCATGT TTCCCCAAAG AAAGGACTCT AGTTTTGATG ATTACATATT CACTCAGTCA
  GTCACATATG CTCCTCCACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730857	MGP_WTSI_11_67067166	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252280378					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730857	MGP_WTSI_11_67067166	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67144490 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	Intron
Rr449442	regulatory region 449442	134 bp proximal
Tssr3528	transcription start site region 3528	1069 bp upstream
Tssr3529	transcription start site region 3529	1125 bp upstream
Tssr102199	transcription start site region 102199	1929 bp downstream
Tssr102200	transcription start site region 102200	1778 bp downstream
Tssr102201	transcription start site region 102201	146 bp downstream
Tssr102202	transcription start site region 102202	333 bp upstream
Tssr102203	transcription start site region 102203	393 bp upstream
Tssr102204	transcription start site region 102204	791 bp upstream
Tssr102205	transcription start site region 102205	1009 bp upstream
Tssr102206	transcription start site region 102206	1113 bp upstream
Tssr102207	transcription start site region 102207	1757 bp upstream
Tssr102208	transcription start site region 102208	1927 bp upstream
Tssr102209	transcription start site region 102209	1962 bp upstream
Tssr102210	transcription start site region 102210	1980 bp upstream
Tssr102211	transcription start site region 102211	1990 bp upstream
Tssr108532	transcription start site region 108532	1906 bp upstream
Tssr108533	transcription start site region 108533	1754 bp upstream
Tssr108534	transcription start site region 108534	1060 bp upstream
Tssr108535	transcription start site region 108535	954 bp upstream
Tssr108536	transcription start site region 108536	380 bp downstream
Tssr108537	transcription start site region 108537	392 bp downstream
Tssr108538	transcription start site region 108538	894 bp downstream
Tssr108539	transcription start site region 108539	1102 bp downstream
Tssr108540	transcription start site region 108540	1162 bp downstream
Tssr108541	transcription start site region 108541	1771 bp downstream
Tssr108542	transcription start site region 108542	1932 bp downstream