rs252280877 SNP Detail

Summary

• ID
  rs252280877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49430341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCGCCCCCG CCCCACCTTC CAGGCCCCGT
  TCCCCCGATG CCCGGCTCTC CGGAGCTTGC TGGCCCGCTC GCTCCCAGGG CGCTGCCGGG
  GCCGCCGCGT CCCCAGGGTT CACGCCCTCT CCCGCACCCT CGCAGCTCGC CCCTccgccg
  Y
  gccccccgcc ccgcTCTTCC AGACAAAATT GGATACAAAC TTTAATCAAT AAGGATAAAT
  ATTGACGCGC AAAGGAAAAT AATCCCATAC AGGGAGGAGG CCACAGTCGA GCGGCCGCGG
  CCCGGGGCGC ACGCCCCACG CTAATCCTGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324031624	CHEV_12_50484545	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252280877					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49430341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	within coordinates
Foxg1	forkhead box G1	within coordinates
Gm34304	predicted gene, 34304	1730 bp upstream
Gm43517	predicted gene 43517	1616 bp upstream
Rr465759	regulatory region 465759	541 bp distal
Rr465760	regulatory region 465760	within coordinates
Rr465761	regulatory region 465761	196 bp proximal
Rr465762	regulatory region 465762	1811 bp proximal
Tssr3838	transcription start site region 3838	774 bp upstream
Tssr113389	transcription start site region 113389	1563 bp downstream
Tssr113390	transcription start site region 113390	1480 bp downstream
Tssr113391	transcription start site region 113391	891 bp downstream
Tssr113392	transcription start site region 113392	867 bp downstream
Tssr113393	transcription start site region 113393	756 bp downstream
Tssr113394	transcription start site region 113394	453 bp downstream
Tssr113395	transcription start site region 113395	359 bp upstream
Tssr113396	transcription start site region 113396	567 bp upstream
Tssr113397	transcription start site region 113397	700 bp upstream
Tssr113398	transcription start site region 113398	729 bp upstream
Tssr113399	transcription start site region 113399	798 bp upstream
Tssr113400	transcription start site region 113400	808 bp upstream
Tssr113401	transcription start site region 113401	952 bp upstream
Tssr113402	transcription start site region 113402	1002 bp upstream
Tssr113403	transcription start site region 113403	1377 bp upstream
Tssr113404	transcription start site region 113404	1403 bp upstream
Tssr113405	transcription start site region 113405	1428 bp upstream
Tssr113406	transcription start site region 113406	1631 bp upstream
Tssr113407	transcription start site region 113407	1886 bp upstream
Tssr116231	transcription start site region 116231	1728 bp upstream