rs252296590 SNP Detail

Summary

• ID
  rs252296590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19307322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGAGAACTC ACCAAGGCCT GTCCCTGCAG GCGCTGCTCC
  TACACCCGCG CCGCCGCCAC CGCCGCCGCC CAGGGCCGGG CAGGCGCCGA GCCCCGACTG
  Y
  CTAGTTTCCG CCCGCGCAAC CTCAGCAGAG GTCCGGATGG GCACAGAGTC CGGAGCTCCT
  GAGTTCCGCC CCCGCCCCGC GCCTCCACTT TCCCCACAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322117465	CHEV_7_20158746	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252296590					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19307322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	within coordinates
Gemin7	gem nuclear organelle associated protein 7	54 bp upstream
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	440 bp distal
Rr643194	regulatory region 643194	within coordinates
Rr643195	regulatory region 643195	240 bp proximal
Tssr70933	transcription start site region 70933	34 bp upstream
Tssr70934	transcription start site region 70934	20 bp upstream
Tssr70935	transcription start site region 70935	within coordinates
Tssr70936	transcription start site region 70936	396 bp downstream