rs252297198 SNP Detail

Summary

• ID
  rs252297198
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71246870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCT CCACACAGAA ACACACTACA
  T
  GCAGGGCGTG GTGGCTGGCA CACAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321817314	CHEV_6_71219880	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252297198					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71246870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	1516 bp proximal
Krcc1	lysine-rich coiled-coil 1	1791 bp upstream
Mir8112	microRNA 8112	1785 bp upstream
Rr379579	regulatory region 379579	within coordinates
Rr379580	regulatory region 379580	835 bp upstream
Tssr56988	transcription start site region 56988	988 bp upstream
Tssr56989	transcription start site region 56989	1689 bp upstream
Tssr56990	transcription start site region 56990	1786 bp upstream
Tssr61348	transcription start site region 61348	828 bp downstream
Tssr61349	transcription start site region 61349	845 bp downstream
Tssr61350	transcription start site region 61350	1595 bp downstream