rs252313214 SNP Detail

Summary

• ID
  rs252313214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161575496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTGCAAT GTCaaaataa attaattaaa
  ttaaataaaa aGgtgtgtgt gtgtgtgtgt ctgtgtgtgt ctgtgtgtgt ctgtgtgtgt
  gtctgtgtgt gtgtctgtgt ctgtgtctgt gtgtctgtgg gtgtctttca tttgagaatc
  Y
  agagcattgg ggtggctaat gaggaactca cgcagccact gccagggagg tagaacgaat
  tgttcaacaa cagcaacaTG GGGGGCTCAG CTACTTGGCA GTCACACCTA CCTGCTCAGC
  AATCCCTGCT CTTCACCTCT TCTCCCCTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320081474	CHEV_1_163678058	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252313214					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161575496 () rs orientation: forward

Symbol	Name	Function Class
Gm5049	predicted gene 5049	282 bp downstream
Gm70711	predicted gene, 70711	438 bp upstream
Rr396465	regulatory region 396465	297 bp upstream
Rr421832	regulatory region 421832	255 bp proximal
Rr421833	regulatory region 421833	839 bp proximal
Tssr9696	transcription start site region 9696	376 bp downstream