rs252320403 SNP Detail

Summary

• ID
  rs252320403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:43484052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAACTAA TTTGTAGTAT
  AGTCTCTAAA TATTTTGTTT CCTTCCCTCA GAAATGTTTA TCTACAATTT GTAATAGAAT
  AGAAACAACA GAATTTAGTC TCTCATATTA GTGGTAGACT ATGAAAATCT GAGAAGCAGG
  TATTTCTGAC CAACAGAGAA CTAACTGGAA CATTGTTCTA GGAGTTCCTC AGAAACAGAA
  R
  AGAAAATGGA GCAGGAGAGA AATGGGTTTC CAGGAGATTT CTTGGCTCCC AATCTTAGTC
  TATTCCCCAG CTTCCCTCTT GAACAGCTGT CCAGTCAGAG TCCCTAACCC AGAGGATCTA
  TGAAGTCCTT CCTCTGCAAT CCCAAACGTG TATGCATCCC TTTCTCAGCG ATTGCCTCTT
  ACCATGTGGT CACACAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396093516	MGP_WTSI_16_43663802	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252320403					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396093516	MGP_WTSI_16_43663802	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43484052 () rs orientation: forward

Symbol	Name	Function Class
Rr404824	regulatory region 404824	1897 bp downstream
Rr516192	regulatory region 516192	447 bp proximal
Tigit	T cell immunoreceptor with Ig and ITIM domains	Intron
Tssr138525	transcription start site region 138525	841 bp upstream
Tssr141140	transcription start site region 141140	458 bp upstream
Tssr141141	transcription start site region 141141	415 bp downstream
Tssr141142	transcription start site region 141142	443 bp downstream
Tssr141143	transcription start site region 141143	456 bp downstream
Tssr141144	transcription start site region 141144	671 bp downstream
Tssr141145	transcription start site region 141145	1310 bp downstream