rs252321907 SNP Detail

Summary

• ID
  rs252321907
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86579663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTCAAT GCCACCCTGT
  AAATGATTGA TAATGTAAAG AATGTTAAAA GGGGGCAGTG GTGGAGCACG CCTTAAATCC
  CAGCAGTCGG GAGGCAGAGG CAGTCAGATT TCTGAGTTCT CTGAGTTCAA GGCCAGCCTG
  GTCTACAAAG TGAGTTCCAG GACAACCAGG GCTACACAGA GAAATCCTGT CTCGAAAAAC
  M
  AAAAAAAAAC AAAACAAAAC AAAACAAAAA AAAGGGGGGG GGGAGGTGCT AAAGAGTTCA
  GCAGTTAAAA ACACTTGATG CTCTGCTGCA GAGGACCCAA GTCCAGGTCC CAAGGCCCAA
  GCGGTATGGC TTACAAATAC CTGTGCATAT AGCTCCAGGG GATGTGACGC CCTCTCTTGG
  GTTCTTCACA CACTGGAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	JF1/MsJ	NZB/BlNJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss378360633	MGP_WTSI_9_86591643	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	C	C	C	C	A	A	A	A	A	A	C	A	C	C	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	JF1/MsJ	NZB/BlNJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs252321907					SNP	C	A	C	C	C	C	A	A	A	A	A	A	C	A	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378360633	MGP_WTSI_9_86591643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86579663 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	within coordinates
Cpgi22104	CpG island 22104	1241 bp distal
Gm55057	predicted gene, 55057	1433 bp downstream
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	1696 bp upstream
Rr205233	regulatory region 205233	470 bp distal
Rr206830	regulatory region 206830	1062 bp distal
Rr211051	regulatory region 211051	939 bp proximal
Tssr90786	transcription start site region 90786	1954 bp upstream
Tssr90787	transcription start site region 90787	1932 bp upstream
Tssr90788	transcription start site region 90788	1821 bp upstream
Tssr90789	transcription start site region 90789	1756 bp upstream
Tssr90790	transcription start site region 90790	1652 bp upstream