rs252331480 SNP Detail

Summary

• ID
  rs252331480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57882868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTTTTAA ATTTGTGCTG AATAATTTCA
  ATAAAACTTC AAAAGTCCCA ACAATTAATG CACTAGAAAT GTAGAGTTTC AGTTATCCCG
  CTATTCTCAA ATCCTATTGA ATTTATCATT TGATGTGctt tcttccttcc ttcctttctt
  Y
  ctttctttct ttctttcttt ctttctttct ttcttttttA AAAGATAATG ACTTTATACA
  TAAAAATGTT TTATAGTATT TCATGAATGA AATGTAAGGT AATTTTCATA TTTGGGTTTG
  AATAAACATT TATTTTAAAA TTCATTTTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321551269	CHEV_5_58116765	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252331480					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57882868 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	within coordinates
Pcdh7	protocadherin 7	within coordinates
Rr125228	regulatory region 125228	867 bp distal
Rr125229	regulatory region 125229	67 bp distal
Rr125230	regulatory region 125230	332 bp proximal
Tssr46296	transcription start site region 46296	1766 bp upstream