rs252343048 SNP Detail

Summary

• ID
  rs252343048
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79765412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCACAGG TAGTAACAGG
  CCTAGCTATG AGATCTGTTG GTTTTTCAGG TGCAATAAAT GCCGACTGAA TGTAACCTGA
  CACCAGGTGA GCTGAGTGGC CAATAGCGGG AGGTGGAGAA GTATGCGAAA GAACTGGAAT
  TTCAGGTGTG GGGAGTAATT GCAGCCTCCC CCAGAGGCCT GGGACTGTGT CAGCAAAAAG
  K
  CGAGAGTAGA GAAAGTCAGC CTGATTGGTT CGCTCATCCT GGGGCTTTTA AAGTTAACGC
  AGTTGAAGCT CAGGTGAGTT TGATTGGGAA AAGACCTGCT TGAGCTTCAC CAGAGCTACA
  TCTGGGCCTT GATATGCAGT GCCACCGTTT GGACTTTATT TATAAGAAAG TCAAAGCAGT
  TTGATAAAGT TGTGATTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391683700	MGP_WTSI_14_79927779	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	G	T	T	T	T	G	T	T	T	T	T	T	T	G	G	T	G	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252343048					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	G	T	T	T	T	G	T	T	T	T	T	T	T	G	G	T	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391683700	MGP_WTSI_14_79927779	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79765412 () rs orientation: forward

Symbol	Name	Function Class
Elf1	E74 like ETS transcription factor 1	within coordinates
Gm9243	predicted gene 9243	within coordinates
Gm63329	predicted gene, 63329	1793 bp upstream
Rr496130	regulatory region 496130	within coordinates
Rr496131	regulatory region 496131	1725 bp proximal
Rr496132	regulatory region 496132	1734 bp proximal
Tssr129913	transcription start site region 129913	1792 bp upstream
Tssr129914	transcription start site region 129914	1733 bp upstream