rs252345349 SNP Detail

Summary

• ID
  rs252345349
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74694540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCCTAAC CAAGGAAGCA
  TATCCATACA AGGATTCAGT TTAGGAGGAA AGAAGGAAGG AAGAGGCTTT GAAGGATGGT
  CATTAGAGCT TTATGAGCTT CTCTGCTTTG TAGAAATCAT TTTCAAAGCT TAGCTCAAGT
  GCTACCTCCA CCACGCAGGC CTCCTACCGC ATTCACCACC ATTCATTAAT CAACTCGTTG
  K
  TGATGTCTAA ACTCTTTGTC TAGACAATGA TTTGAAAGAC AAACTCTTTT CCAGACTGGA
  AAGAAAAGCA ATTCACTCTG CAAAAGACAA TCAACTCTCT CATGAAACCA CCCAATTTTA
  CTTTAGATGC ACTTAACAGT GAGAATGGAG CTAACCACGG TGTGGTGGTG GTAACTGCCC
  ACGGTACTCT CAAGCAGATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365470993	MGP_WTSI_5_74929904	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252345349					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365470993	MGP_WTSI_5_74929904	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74694540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15971	CpG island 15971	1944 bp distal
Cpgi15972	CpG island 15972	1430 bp proximal
Fip1l1	factor interacting with PAPOLA and CPSF1	1570 bp upstream
Rr399135	regulatory region 399135	1974 bp downstream
Rr399136	regulatory region 399136	1321 bp upstream
Rr613305	regulatory region 613305	1630 bp distal
Rr613306	regulatory region 613306	1080 bp proximal
Rr613307	regulatory region 613307	1613 bp proximal
Tssr46674	transcription start site region 46674	1587 bp upstream
Tssr46675	transcription start site region 46675	1656 bp upstream
Tssr46676	transcription start site region 46676	1762 bp upstream