rs252355891 SNP Detail

Summary

• ID
  rs252355891
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107007640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGAGAGC AGACAGGGCA
  CCAGAAACCA TTGTTTTTTA GGTGATTGTT AGAGATAAAC TCTTCATGCA CAGTTTACCA
  CTGACAGGTT GCTTCTTCTG CAGCAAATTT ACTTATCCAA TAACTTGACA GAAATTGAAG
  TTTGAATTTG GCAAGTGAAA CACCCAGGCT AGACTCTGGA TCCTGCATTG ACAACCGATC
  K
  TCATAGCCAA TCTTCCAGGA GCCAGAAGCC AAACGAGTCT GGTCTTACAA GACATTGATT
  TCCCTCTAAG CCCACCAAAG CCTTCTAGCT TTGTAGCTCT AGGTAGGGTC CAATCTTTCA
  CCCACCTTAT AGGCTCCCAC TGGGAAATGG CCGAATCTCT TAGAACCTTC CCTTGCAGGG
  AAGCAGGCTT TCAGAGTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359138115	MGP_WTSI_3_106903242	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252355891					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359138115	MGP_WTSI_3_106903242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107007640 () rs orientation: forward

Symbol	Name	Function Class
A930002I21Rik	RIKEN cDNA A930002I21 gene	1699 bp downstream
Cpgi13670	CpG island 13670	593 bp proximal
Kcna2	potassium voltage-gated channel, shaker-related subfamily, member 2	822 bp upstream
Rr77034	regulatory region 77034	360 bp proximal
Tssr31156	transcription start site region 31156	604 bp upstream
Tssr31157	transcription start site region 31157	703 bp upstream
Tssr31158	transcription start site region 31158	943 bp upstream
Tssr31159	transcription start site region 31159	1227 bp upstream
Tssr31160	transcription start site region 31160	1254 bp upstream
Tssr31161	transcription start site region 31161	1272 bp upstream
Tssr31162	transcription start site region 31162	1336 bp upstream
Tssr31163	transcription start site region 31163	1376 bp upstream
Tssr31164	transcription start site region 31164	1442 bp upstream