rs252361872 SNP Detail

Summary

• ID
  rs252361872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:6735398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTGCAAA ACCAGTTTAT CTCTAGGTCC
  TGGCTCATCA GCTCTCTGGG AAGTCAGTAG GCTGTAAGAG CTCCCGCAGA GATAAGATCT
  CCCCTTTGCC TCAGTATTTT CCATGCTTAC TATCGCTCCA AACTGTACAC AGTCTCTTTT
  Y
  ACCCACTCCA CAGCCTCACT ACATGTCTTT GGCTCATATA CGTGTCATGA AGACTTCTCT
  TTCATTTCCC TGGAATTGTA TGACAATTTC ACCAACTCTC TTGATGCTTA AGCTGGCAAT
  GAGATTGAAC ATCTGAAATG CAACAGTAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322100347	CHEV_7_6685110	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252361872					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:6735398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18301	CpG island 18301	1793 bp distal
Gm56178	predicted gene, 56178	1708 bp downstream
Peg3	paternally expressed 3	1968 bp upstream
Rr642262	regulatory region 642262	1806 bp distal
Rr642263	regulatory region 642263	1109 bp distal
Tssr64455	transcription start site region 64455	1753 bp downstream
Tssr64456	transcription start site region 64456	1683 bp downstream
Tssr64457	transcription start site region 64457	1722 bp upstream
Tssr70607	transcription start site region 70607	1968 bp upstream
Usp29	ubiquitin specific peptidase 29	within coordinates