rs252373412 SNP Detail

Summary

• ID
  rs252373412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTCTGC TGAGGACCAC
  CATCACACAC TTGGAGTCTA GGATCTGCTC TAGACTCATT TATCCCCTTA GGTGACATGA
  GATTTTTCTG GGATCTTAAA AAACAAAACA AAACAAAAAA ACCAAAAACT CTATTGACTT
  GAAGCACAAA CCCCTTTGGT GACACAAAGT CCCTTGAAGT GAAATGAGGC TCCTAATAGT
  Y
  CACATTTATA TAAATGCCTG ATTAAAGGAC ACACTGAAGA AAAAACCATC AGGGATGTTG
  AGTGACATCC AGCAATGTAT CACTTTTTAA AATCCATAAT AATCCTTTAT CCCAAATATA
  TCGAAGCCCA AAGATTGTTG CTAAAGGATT GGGAATTTGC ATTGTGCTAA GACAAGACTA
  CTAATCCCTT ATATCATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072551	MGP_WTSI_11_83390234	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252373412					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072551	MGP_WTSI_11_83390234	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467558 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	1894 bp proximal
Tssr103716	transcription start site region 103716	1366 bp downstream
Tssr109682	transcription start site region 109682	1738 bp upstream
Tssr109683	transcription start site region 109683	1690 bp upstream
Tssr109684	transcription start site region 109684	1664 bp upstream
Tssr109685	transcription start site region 109685	1623 bp upstream
Tssr109686	transcription start site region 109686	1554 bp upstream
Tssr109687	transcription start site region 109687	1500 bp upstream
Tssr109688	transcription start site region 109688	1459 bp upstream
Tssr109689	transcription start site region 109689	1417 bp upstream
Tssr109690	transcription start site region 109690	1408 bp upstream
Tssr109691	transcription start site region 109691	1394 bp upstream
Tssr109692	transcription start site region 109692	1366 bp upstream
Tssr109693	transcription start site region 109693	1249 bp upstream
Tssr109694	transcription start site region 109694	822 bp upstream
Tssr109695	transcription start site region 109695	774 bp upstream
Tssr109696	transcription start site region 109696	215 bp downstream
Tssr109697	transcription start site region 109697	405 bp downstream
Tssr109698	transcription start site region 109698	1688 bp downstream
Tssr109699	transcription start site region 109699	1735 bp downstream
Tssr109700	transcription start site region 109700	1764 bp downstream
Tssr109701	transcription start site region 109701	1797 bp downstream
Tssr109702	transcription start site region 109702	1854 bp downstream
Tssr109703	transcription start site region 109703	1864 bp downstream
Tssr109704	transcription start site region 109704	1888 bp downstream