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rs252376562 SNP Detail
Summary
  • ID
    rs252376562
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:101168259 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGCCTACCA TGGACCTGGC
CAGCCCCGAG ACAGCACCTG CCGCACCTGC TACACTGCCC AGCTTCAGCA CCTTCATGGA
CGGGTACACC GGAGAGTTTG ACACCTTCCT CTACCAGCTG CCGGGGACGA CCCAGCCGTG
CTCCTCAGCT TGTTCCTCTG CCTCCTCCAC GTCTTCTTCC TCATCCTCGG CCACCTCCCC
Y
GCTTCGGCGT CCTTCAAGTT TGAGGACTTC CAGGTGTACG GCTGCTACCC GGGCACCCTG
AGCGGCCCAT TAGATGAGAC CCTATCCTCC AGCGGCTCTG AGTACTATGG CAGTCCCTGC
TCAGCCCCCT CGCCATCTAC ACCCAACTTC CAGCCGTCCC AGCTTTCTCC CTGGGACGGC
TCATTTGGCC ACTTCTCCCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395192992 MGP_WTSI_15_101100809 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252376562 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395192992 MGP_WTSI_15_101100809 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:101168259 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Nr4a1 nuclear receptor subfamily 4, group A, member 1 within coordinates
Rr510002 regulatory region 510002 1806 bp distal
Tssr133222 transcription start site region 133222 962 bp downstream
Tssr133223 transcription start site region 133223 272 bp downstream
Tssr133224 transcription start site region 133224 254 bp downstream
Tssr133225 transcription start site region 133225 238 bp downstream
Tssr133226 transcription start site region 133226 220 bp downstream
Tssr133227 transcription start site region 133227 207 bp downstream
Tssr133228 transcription start site region 133228 191 bp downstream
Tssr133229 transcription start site region 133229 153 bp downstream
Tssr133230 transcription start site region 133230 94 bp downstream
Tssr133231 transcription start site region 133231 68 bp downstream
Tssr133232 transcription start site region 133232 41 bp downstream
Tssr133233 transcription start site region 133233 20 bp downstream
Tssr133234 transcription start site region 133234 within coordinates
Tssr133235 transcription start site region 133235 18 bp upstream
Tssr133236 transcription start site region 133236 67 bp upstream
Tssr133237 transcription start site region 133237 89 bp upstream
Tssr133238 transcription start site region 133238 122 bp upstream
Tssr133239 transcription start site region 133239 164 bp upstream
Tssr133240 transcription start site region 133240 256 bp upstream
Tssr133241 transcription start site region 133241 273 bp upstream
Tssr133242 transcription start site region 133242 281 bp upstream
Tssr133243 transcription start site region 133243 307 bp upstream
Tssr133244 transcription start site region 133244 328 bp upstream
Tssr133245 transcription start site region 133245 372 bp upstream
Tssr133246 transcription start site region 133246 397 bp upstream
Tssr133247 transcription start site region 133247 485 bp upstream
Tssr133248 transcription start site region 133248 505 bp upstream
Tssr133249 transcription start site region 133249 1356 bp upstream
Tssr133250 transcription start site region 133250 1390 bp upstream
Tssr133251 transcription start site region 133251 1421 bp upstream
Tssr133252 transcription start site region 133252 1768 bp upstream
Tssr133253 transcription start site region 133253 1779 bp upstream
Tssr133254 transcription start site region 133254 1799 bp upstream
Tssr133255 transcription start site region 133255 1832 bp upstream
Tssr133256 transcription start site region 133256 1873 bp upstream
Tssr133257 transcription start site region 133257 1891 bp upstream
Tssr136545 transcription start site region 136545 68 bp upstream
Tssr136546 transcription start site region 136546 43 bp downstream
Tssr136547 transcription start site region 136547 119 bp downstream
Tssr136548 transcription start site region 136548 129 bp downstream
Tssr136549 transcription start site region 136549 163 bp downstream
Tssr136550 transcription start site region 136550 269 bp downstream
Tssr136551 transcription start site region 136551 345 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory