rs252391036 SNP Detail

Summary

• ID
  rs252391036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36073129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGACGCAGA ACGGCTCCCA
  GGTTGCTGGA GAAGGGGCAC TGTTGAGAGT ACCTACCTCT TCACCTGTTT GAGATTGTTT
  TCCAACCCCT AGCAGTCTTT GAAGGGTCAA ATGCATCCAC CCTTCCTCTC ACAAAATGAG
  ATTTCCTTCC AAAAAATGGG AGGAATGGAC TCCTATCTGT GCACGTGGCC AGGCTACAGT
  R
  GGAGGGACCA GGTTAGGTGT CTGCAGAGTC TTGTGCTTGG GTGACTCATT AAGATTGAGC
  TGGGACCTTG TACCCATCTC TGGTCTGGCA TCATGGATAG TAGCTGAGTC CCTTGAAATG
  TCTCTCTTCA TCTGCTTTGC ATGACAGGGT GGTAGACAGC CAAACCTGAG AACCTATGAC
  ATGTTCTTGG ATCAGCAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584112	CHEV_18_36099730	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252391036					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36073129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9857	CpG island 9857	1241 bp distal
Cpgi9858	CpG island 9858	100 bp distal
Gm56493	predicted gene, 56493	within coordinates
Rr536027	regulatory region 536027	711 bp distal
Rr536028	regulatory region 536028	419 bp distal
Rr536029	regulatory region 536029	198 bp distal
Rr536030	regulatory region 536030	320 bp proximal
Rr536031	regulatory region 536031	1832 bp proximal
Rr536032	regulatory region 536032	1861 bp proximal
Tssr152921	transcription start site region 152921	1867 bp upstream