rs252397904 SNP Detail

Summary

• ID
  rs252397904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTACTTTT ACTTTAAGAG
  CCTGGGTTCC ACTTCTAAAA CTAATAAAGA GAAGCATCAT TCACTCTCTG TTGTCTCTTC
  TGGAGCCCAA ATGGCACCGC TGAAGGCCAG CCACGGGTCA GGCGCTCACA CATCTGTCAC
  TTGATCTCAC AGGACAGACA TAGAGCTACG CTTGGACATT ATGTAGATCT GGACGGAGGC
  Y
  GAACCTCTGT AGACAGAACC CAGGGGGCTT GAGAGGAAAG AGCTTGTTTT CAGGCACGAG
  AGTCTTTGAG CTTACGCCCC CATACCCTTC CCGTGCATGG TCTGCCTTCT GCTGGAAAGG
  AGCCGGCTAT AGCCTGCTTT TATTTTGGTG AGGAAAACCA AGTACCTGGG ACCTTGTCCG
  TACTACTGTC CTGCAGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356251424	MGP_WTSI_2_156922821	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252397904					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356251424	MGP_WTSI_2_156922821	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939005 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1408 bp distal
Rr568432	regulatory region 568432	1851 bp distal
Samhd1	SAM domain and HD domain, 1	449 bp downstream
Tldc2	TBC/LysM associated domain containing 2	603 bp downstream
Tssr27104	transcription start site region 27104	1373 bp downstream
Tssr27105	transcription start site region 27105	1418 bp downstream
Tssr27106	transcription start site region 27106	1507 bp downstream
Tssr27107	transcription start site region 27107	1651 bp downstream
Tssr27108	transcription start site region 27108	1777 bp downstream
Tssr27109	transcription start site region 27109	1849 bp downstream
Tssr27110	transcription start site region 27110	1903 bp downstream