rs252405644 SNP Detail

Summary

• ID
  rs252405644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:38299767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCGGGGA GGGGCCGCGG
  GCGCCGCCGC CAACCGCTCG CCAGTGCGCG CCGGGCGGCG CGAGGGCTGG GCGGTGTCGG
  CTCCCGAGTC GCCCGCCCCT TCCACCTCCT CCGAGCCGCG GTTCCCTTAG GAACCGACAG
  CAGGGCCGGG CCTCGTTCCC GCCCCTGGCG GAGGCCGGGG CTGGGTCACT CGGGGACGAG
  R
  AGCTCCCCGG GTGCACCCGT TCGCCGCCCA TCCCTGGCCT CCGCCTCGGC TGCGGGAGGT
  GGGGCCGGGT CCCCGCGGAA GCCCGACCGC CGCCCTCCTC CTGCTCGCCG CCTCCGGGGA
  GCGGCCGGAG CCTGGGGCAC TCCGCCCACT CGGCCCGCGG GACCTCAGCC TACCCGCATC
  TGCAGCATTC GTCCGACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss393693047	MGP_WTSI_15_38229278	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs252405644					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393693047	MGP_WTSI_15_38229278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:38299767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7049	CpG island 7049	within coordinates
Gm35248	predicted gene, 35248	within coordinates
Klf10	Kruppel-like transcription factor 10	within coordinates
Rr501355	regulatory region 501355	517 bp distal
Rr501356	regulatory region 501356	within coordinates
Rr501357	regulatory region 501357	1143 bp proximal
Rr501358	regulatory region 501358	1173 bp proximal
Rr501359	regulatory region 501359	1503 bp proximal
Tssr4579	transcription start site region 4579	762 bp upstream
Tssr131113	transcription start site region 131113	157 bp downstream
Tssr131114	transcription start site region 131114	9 bp downstream
Tssr131115	transcription start site region 131115	869 bp upstream
Tssr131116	transcription start site region 131116	1669 bp upstream
Tssr134124	transcription start site region 134124	167 bp downstream
Tssr134125	transcription start site region 134125	1137 bp downstream
Tssr134126	transcription start site region 134126	1170 bp downstream