rs252405863 SNP Detail

Summary

• ID
  rs252405863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGGGACT GTATACTCGA
  GTCCTTGGTT CTGGCATTTT CTGGGGGCAT GTTTAATAGA AATCAAACTC CGCCAACTTT
  CGGTGAGGTG GTGGGTGGTG AGTGGAAAGA TGGTGTTTAA AGCCAGACAT CGAGATTCCA
  ACCTCAGACA AAGAAAATAC GTCTAAATCT GCCCATCTTC ATCCAAGAGA AAGAACCTAT
  Y
  CATCTATTTC TCTCATCCCA CGAATCTTTC CAAACATGCC TCGCATCTTG TCTGACATAA
  AATTTCTTCA CATTGCTTAT TTACCAGTGT GGACCTTTGG AGTGGTTACT TATCAGAAAA
  GGTGCTCTAC TTTGGTGCTT GTGTGCAAGG AAGGCAGTAT CATGTGCTCA AACATATCTC
  TAGAATTACA TATTAGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355075056	MGP_WTSI_2_102500578	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252405863					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355075056	MGP_WTSI_2_102500578	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	666 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1752 bp distal
Rr561714	regulatory region 561714	1609 bp distal
Rr561715	regulatory region 561715	1130 bp distal
Rr561716	regulatory region 561716	345 bp distal
Rr561717	regulatory region 561717	1876 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19100	transcription start site region 19100	1841 bp downstream
Tssr19101	transcription start site region 19101	1752 bp downstream
Tssr19102	transcription start site region 19102	1726 bp downstream
Tssr19103	transcription start site region 19103	1679 bp downstream
Tssr19104	transcription start site region 19104	1657 bp downstream
Tssr19105	transcription start site region 19105	1587 bp downstream
Tssr19106	transcription start site region 19106	1569 bp downstream
Tssr19107	transcription start site region 19107	1549 bp downstream
Tssr19108	transcription start site region 19108	1513 bp downstream
Tssr19109	transcription start site region 19109	1471 bp downstream
Tssr19110	transcription start site region 19110	1189 bp downstream