rs252409307 SNP Detail

Summary

• ID
  rs252409307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94536550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGCCA TCGATTCATC
  ATATAGAGAA AAATTTAAGG GAACAAGTAT TTGCTAGAGG CTTTCATGAA AGACTGTCCC
  TGGGCCTTTG GCATCAAGCC ATCCTAGGAT GGTAACCATC TCTAGCGACA GAGGTTGTGG
  GCATCTCGCG GTAAGGCTCA CATTGGCTAA GGGAGGCAAA AACTCCTGCG GAGCAGGCCT
  Y
  GCCTCTTCTC TGCCTGCTAC TTTCCTCTCT ACTAGCCCAG TCTCTAGACA CTAGATGCTC
  AATAAATGCG GACCCAAATC CGTCACTGAG CCCCAGCGCG TTATTATGGA GTGAGCGGGT
  TTATCCTGAC CCACTACCTC CTCACATCTG CGGAGGCACC ATAGCTCGAC TAGGGGCTAC
  ACCTCCAGCC GCGAAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375627893	MGP_WTSI_8_96333822	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252409307					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375627893	MGP_WTSI_8_96333822	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94536550 () rs orientation: forward

Symbol	Name	Function Class
4930488L21Rik	RIKEN cDNA 4930488L21 gene	1772 bp downstream
Cpgi20831	CpG island 20831	within coordinates
Gnao1	guanine nucleotide binding protein, alpha O	663 bp upstream
Tssr78791	transcription start site region 78791	543 bp upstream
Tssr78792	transcription start site region 78792	630 bp upstream
Tssr78793	transcription start site region 78793	650 bp upstream
Tssr78794	transcription start site region 78794	849 bp upstream
Tssr78795	transcription start site region 78795	868 bp upstream
Tssr78796	transcription start site region 78796	885 bp upstream
Tssr78797	transcription start site region 78797	897 bp upstream
Tssr78798	transcription start site region 78798	910 bp upstream
Tssr78799	transcription start site region 78799	966 bp upstream
Tssr78800	transcription start site region 78800	1008 bp upstream
Tssr78801	transcription start site region 78801	1068 bp upstream
Tssr78802	transcription start site region 78802	1161 bp upstream
Tssr78803	transcription start site region 78803	1361 bp upstream
Tssr78804	transcription start site region 78804	1400 bp upstream
Tssr82468	transcription start site region 82468	303 bp downstream