rs252414675 SNP Detail

Summary

• ID
  rs252414675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:71367563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAACTGT AGCCCAGGCT
  GGTCTGAAAT TCACTATTTA GCACAGGCTG GCCTTGATTT TTTTTTTTTT TTTTTTTTTG
  GTTTTTCGAG ACAGGGTTTT TCTGTGTAGT CCTGGCTGTC CTGGAACTCA CTCTGTAGAT
  CAGGTTGGCC TCGAACTCAG AAATCCGCCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG
  R
  CGTGCGCCAT CACCACCCGG CTGATGGGAG ATTCTTTATG TCTTTCAAAT TCTACTTTGG
  CGTATTAGTG TACCTTGCTG ATCCTCGCCT GAGTTACTGC CTTGTTAAAA AATGAAACTG
  GTTTTCTAAA ACCAGTTTCG TCTTCCCCCT TCACTAACAT TCTAAGGAAA GAGCTTTCCT
  TGTGCCTCTC TCTTCCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	NOD/ShiLtJ	PL/J	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ
ss386433161	MGP_WTSI_12_72421776	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	G	G	G	A	A	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	NOD/ShiLtJ	PL/J	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ
rs252414675					SNP	G	G	G	A	G	G	G	G	G	A	A	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386433161	MGP_WTSI_12_72421776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:71367563 () rs orientation: forward

Symbol	Name	Function Class
4930474H06Rik	RIKEN cDNA 4930474H06 gene	within coordinates
Cpgi4722	CpG island 4722	1877 bp distal
Dact1	dishevelled-binding antagonist of beta-catenin 1	682 bp downstream
Rr267971	regulatory region 267971	1963 bp distal
Rr267972	regulatory region 267972	1638 bp proximal