rs252415681 SNP Detail

Summary

• ID
  rs252415681
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5539314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCTCTT TCCTCAAGCA
  GCCTTATAAG GAGCCTGCAG CTGGCGCTTG GACTGGGCAC GCCCTCTGGA GGCTTATGCC
  CTAATAAGGA CATCTAGGGC ATCCCGCGAC CAGGGGCGGA AGGAGTGCGT CTCCAGGGTA
  ACTGCGTGGC CCCTCCCCCC GTTGCTCTGG GAAACTGCTA GTCTCGAAAA AGGTGGAGCC
  W
  GCCTTCTCCT TAGGAGGGGC CCTTGGGAGA GAAGGGGGTC AAGCTTCGGC CTCCACCTGG
  AGCTCCAGCA GTGTAGCCCA CGGGTGCAGT CACCTGGAGC TCCCGCAGTG TAGCCCACGG
  GTGCAGTCTG ACTACAATCC CCTGACTACA ACCCCCGGCA TCCTCTGCGT GCTGCCTCGC
  TCCTGGGGAA GCTCCTCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401656598	MGP_WTSI_19_5489286	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252415681					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401656598	MGP_WTSI_19_5489286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5539314 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	88 bp upstream
Cfl1	cofilin 1, non-muscle	1169 bp upstream
Cpgi10453	CpG island 10453	916 bp distal
Cpgi10454	CpG island 10454	within coordinates
Cpgi10455	CpG island 10455	967 bp proximal
Gm59148	predicted gene, 59148	within coordinates
Mus81	MUS81 structure-specific endonuclease subunit	853 bp upstream
Rr363568	regulatory region 363568	within coordinates
Rr370432	regulatory region 370432	734 bp downstream
Rr405805	regulatory region 405805	within coordinates
Rr405806	regulatory region 405806	887 bp upstream
Tssr154437	transcription start site region 154437	32 bp upstream
Tssr154438	transcription start site region 154438	1189 bp upstream
Tssr154439	transcription start site region 154439	1226 bp upstream
Tssr154440	transcription start site region 154440	1271 bp upstream
Tssr157605	transcription start site region 157605	890 bp upstream
Tssr157606	transcription start site region 157606	336 bp upstream
Tssr157607	transcription start site region 157607	314 bp upstream
Tssr157608	transcription start site region 157608	228 bp upstream
Tssr157609	transcription start site region 157609	195 bp upstream