rs252417410 SNP Detail

Summary

• ID
  rs252417410
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141266561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCAGAGA AACCCATCCC
  TCCCAAGAAT CATTGGCTTG TAACATTAAG CAACTTTTTA TATAGGAGCT TGCGAAACCT
  TCTGCAAGAT GTCTTTGCTC ATGATTACAG TACACACAAG AATTAAAGCT GAAAGGATAC
  AGACATTCCA TACTGTTTCC CCTCGGAAGG TTTGGAATAG TTGGTTTTTT AAACAGAGAG
  G
  ATTAGACCTC CGGCCCTTCC AGACTTTTGA AACTGGCAGT TGACCTTTCA TGTAAGGCCG
  GCTTTCAGAA AGATAAAACC GCAAAAGGCC ACTGTGGAGT AACAGAAAAA AAAAATCTTA
  ACTCATTAAA ACCGTCAGCA ACTCATACTT TAATTTTTCA TACACAAAAA TAAAATGGTG
  CTTCGGGTAC AGCCTACACT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387949	CHEV_4_141095165	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252417410					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141266561 () rs orientation: forward

Symbol	Name	Function Class
B830004H01Rik	RIKEN cDNA B830004H01 gene	within coordinates
Cpgi15234	CpG island 15234	165 bp distal
Gm4123	predicted gene 4123	1833 bp downstream
Gm68462	predicted gene, 68462	within coordinates
Rr1207	regulatory region 1207	1391 bp distal
Rr603789	regulatory region 603789	163 bp distal
Spen	spen family transcription repressor	653 bp upstream
Tssr44321	transcription start site region 44321	725 bp upstream
Tssr44322	transcription start site region 44322	624 bp upstream