rs252420164 SNP Detail

Summary

• ID
  rs252420164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44387894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttgtgcagg ggccctgcta atcttctctg
  taacattttt atttATTTGG GCATGGGGGT GGGAGGTCCT GTCTCCACAC GCATgccata
  gaacagtgtg tgagacttct ctccttctgc catgcgggtc tctgggatgg agctcaggtc
  R
  tcagacttag caacaagcac ctttacccac tggccgtctT TTTTTCTTTT TCTTTTTTAA
  CATTTGAAGA AACAGGCCTG AAAAGTGATT AGGCCGGGAC CTTTCAGACC AGTCTTTCCT
  TGGGAGAATT TATTATTTCC TTGAAGAACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322940975	CHEV_9_44284680	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252420164					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44387894 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1843 bp proximal
Gm10023	predicted gene 10023	1327 bp downstream
Gm22540	predicted gene, 22540	82 bp upstream
Gm47204	predicted gene, 47204	115 bp downstream
Rr195028	regulatory region 195028	294 bp distal
Rr203857	regulatory region 203857	328 bp distal
Rr206312	regulatory region 206312	906 bp proximal
Rr209142	regulatory region 209142	1694 bp distal
Rr209143	regulatory region 209143	within coordinates