rs252424006 SNP Detail

Summary

• ID
  rs252424006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGGTGAT CTGGAATGTG GCGTTCTTCA
  GGGCTGCAAG GAGATGGGGT TCGAAGAAGG CTGGAGCTGA CCCAAGGACA GGTATCCATG
  TTCCACCCCA GCTTCTCCCC TCAAACTGGT TGCACGCCAA TTCTgcgcgc gcgcgcgcgc
  R
  cgcacacaca cacacacaca cacacacaca cacacacaca cacaAATATC TCTCAGCCTA
  GAAATGGTTC CAATAGCTCA GAGATGTTTT CATAGCTTTA AAGAGCTCAA TGCAGAGAAG
  TGAGTTTGGT GCTGACTACA GGCGTTAGTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355136	CHEV_17_29983713	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252424006					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56908	predicted gene, 56908			within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1			Intron
				Noncoding-Transcript-Variant
Rr392501	regulatory region 392501			40 bp upstream
Rr525087	regulatory region 525087			215 bp distal
Rr525088	regulatory region 525088			480 bp proximal
Tssr143596	transcription start site region 143596			233 bp downstream
Tssr143597	transcription start site region 143597			210 bp downstream
Tssr143598	transcription start site region 143598			1452 bp upstream