rs252426497 SNP Detail

Summary

• ID
  rs252426497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110680634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCACCC CTGTAATCCA
  TTTACTCTTT ATTCTAGAAC CACAGCACAT TAGTGGGAAT TGGTAACGAC TTTGTTTTTT
  GAGTCAGGGT TTCTTTGTGT AGCCCTGCCT GTCCTGGAAC TCACTCTCTA GACCAGACTG
  GCCTTGAAAT CAGAAATCCG CCTGCCTCTG CCTCCCAAGT GCTGGGATTA AAGCCGTGCG
  Y
  CACCACTGCC AGGCTTTTAT GACTGGCCCT TTCTGAACAC CCCCTCCAAT GTATCTACTA
  CCCACTCCCA AAACCATACC TGAAACGAGA AGCACCCCCT TCTGCAATCG CACTCTCCAC
  TTTGGCGGCT TGACAACGAA GAATCTTCAA AAGAATAATA TTAATGGATG GGGTGGGGAG
  GGGAGGGGAT GGTAGAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372719421	MGP_WTSI_7_118224941	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252426497					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372719421	MGP_WTSI_7_118224941	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110680634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	544 bp proximal
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm57201	predicted gene, 57201	1138 bp upstream
Rr166519	regulatory region 166519	1433 bp distal
Rr166520	regulatory region 166520	within coordinates
Rr381309	regulatory region 381309	within coordinates
Tssr2372	transcription start site region 2372	1105 bp upstream
Tssr68538	transcription start site region 68538	1234 bp downstream
Tssr68539	transcription start site region 68539	1747 bp upstream
Tssr68540	transcription start site region 68540	1783 bp upstream
Tssr68541	transcription start site region 68541	1897 bp upstream
Tssr74295	transcription start site region 74295	1114 bp upstream
Tssr74296	transcription start site region 74296	481 bp upstream
Tssr74297	transcription start site region 74297	169 bp downstream
Tssr74298	transcription start site region 74298	599 bp downstream
Tssr74299	transcription start site region 74299	788 bp downstream
Tssr74300	transcription start site region 74300	1020 bp downstream
Tssr74301	transcription start site region 74301	1102 bp downstream
Tssr74302	transcription start site region 74302	1181 bp downstream
Tssr74303	transcription start site region 74303	1570 bp downstream