rs252431918 SNP Detail

Summary

• ID
  rs252431918
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87054119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGGCCG GGTAGTTCAG
  TTCCCACATA CCTGGTGAGG AGCTAGGGAC TGGCAGGAAA AGGAGGCAGA AGACAACCTA
  AAGTTCACCT TCCTTCATCC TCTCTGACCA CAGGTGATCC TTGGTGGGGG CCGAAAATAC
  ATGTTTCCTG CTGGAACCCC AGACCCCGAG TATCCAAATG ATGCTAATGA GACTGGAACC
  M
  GATTGGATGG CAGGAATCTG GTGCAGGAAT GGCTGTCAAA GCACCAGGTG ACCGACTGCA
  GAATATTAGT GATACAGTGG AGACCAGGGA AGGGCTTTGG ACCTTACCAG TTGCTTATGT
  CCCTCTAGGG ATCCCAGTAT GTTTGGAATC GTGAACAACT CATTCAGAAG GCCCAGGATC
  CGTCAGTGAC ATACCTCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380305	MGP_WTSI_1_89022972	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252431918					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380305	MGP_WTSI_1_89022972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87054119 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	713 bp proximal
Rr17963	regulatory region 17963	482 bp proximal
Tssr145	transcription start site region 145	45 bp downstream
Tssr146	transcription start site region 146	1191 bp upstream
Tssr147	transcription start site region 147	1543 bp downstream
Tssr7781	transcription start site region 7781	1437 bp downstream
Tssr7782	transcription start site region 7782	994 bp downstream
Tssr7783	transcription start site region 7783	701 bp downstream
Tssr7784	transcription start site region 7784	459 bp downstream
Tssr7785	transcription start site region 7785	420 bp downstream
Tssr7786	transcription start site region 7786	393 bp downstream
Tssr7787	transcription start site region 7787	64 bp downstream
Tssr7788	transcription start site region 7788	328 bp upstream
Tssr7789	transcription start site region 7789	358 bp upstream
Tssr7790	transcription start site region 7790	412 bp upstream
Tssr7791	transcription start site region 7791	536 bp upstream
Tssr7792	transcription start site region 7792	564 bp upstream
Tssr7793	transcription start site region 7793	577 bp upstream
Tssr7794	transcription start site region 7794	594 bp upstream
Tssr7795	transcription start site region 7795	620 bp upstream
Tssr7796	transcription start site region 7796	643 bp upstream
Tssr7797	transcription start site region 7797	660 bp upstream
Tssr7798	transcription start site region 7798	697 bp upstream
Tssr7799	transcription start site region 7799	933 bp upstream
Tssr7800	transcription start site region 7800	952 bp upstream
Tssr7801	transcription start site region 7801	1011 bp upstream
Tssr7802	transcription start site region 7802	1138 bp upstream
Tssr7803	transcription start site region 7803	1199 bp upstream
Tssr7804	transcription start site region 7804	1223 bp upstream
Tssr7805	transcription start site region 7805	1297 bp upstream
Tssr7806	transcription start site region 7806	1311 bp upstream
Tssr7807	transcription start site region 7807	1331 bp upstream
Tssr7808	transcription start site region 7808	1436 bp upstream
Tssr7809	transcription start site region 7809	1506 bp upstream
Tssr7810	transcription start site region 7810	1531 bp upstream
Tssr7811	transcription start site region 7811	1560 bp upstream
Tssr7812	transcription start site region 7812	1610 bp upstream
Tssr7813	transcription start site region 7813	1651 bp upstream
Tssr7814	transcription start site region 7814	1681 bp upstream
Tssr7815	transcription start site region 7815	1749 bp upstream
Tssr7816	transcription start site region 7816	1789 bp upstream
Tssr7817	transcription start site region 7817	1801 bp upstream
Tssr7818	transcription start site region 7818	1976 bp upstream
Tssr12838	transcription start site region 12838	667 bp upstream
Tssr12839	transcription start site region 12839	657 bp upstream
Tssr12840	transcription start site region 12840	648 bp upstream
Tssr12841	transcription start site region 12841	401 bp downstream
Tssr12842	transcription start site region 12842	727 bp downstream
Tssr12843	transcription start site region 12843	989 bp downstream
Tssr12844	transcription start site region 12844	1180 bp downstream
Tssr12845	transcription start site region 12845	1351 bp downstream
Tssr12846	transcription start site region 12846	1412 bp downstream
Tssr12847	transcription start site region 12847	1883 bp downstream
Tssr12848	transcription start site region 12848	1952 bp downstream
Tssr12849	transcription start site region 12849	1971 bp downstream