rs252433617 SNP Detail

Summary

• ID
  rs252433617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108886703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAACCTG ACCTCCGACT
  GTCAGTTTCC CTTGACACCA TCTTCATAGA AATACCTGAC TCCTGTACCA CAGTCCAGTT
  TGTCCCAGTA GCAGGGACAC CAAGGCCAAT GGGTTATCTG GACCAAAGGT GGGGTGGAGG
  GCCTAGGTGG TATCTCCGGC CCAGATGTGA ATACCTCCAT ATTCCCTGTT GGTTCCTGTT
  Y
  CACTGGCTGT TTTAGCTTTG TGTTGATTGG TGTTTCTGAG CATTCAGACT CCGCACCCTC
  ATTTCTAATA AATGCAACAT TGGACCCGCT TCCCCTTTCT TCAGCGCCTA GGCAGCTGGC
  CTTGGCTCTA CACCAAAAAC TATTTCTGTC TACTTCTTGA ACTTGTTTCT TCCCTCTGTT
  AATTAGCCTA ACAGGTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378877918	MGP_WTSI_9_108960149	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252433617					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378877918	MGP_WTSI_9_108960149	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108886703 () rs orientation: forward

Symbol	Name	Function Class
Gm53191	predicted gene, 53191	298 bp downstream
Rr401693	regulatory region 401693	1984 bp upstream
Rr686956	regulatory region 686956	within coordinates
Rr686957	regulatory region 686957	1606 bp proximal
Shisa5	shisa family member 5	within coordinates
Trex1	three prime repair exonuclease 1	297 bp downstream
Tssr87213	transcription start site region 87213	1644 bp downstream
Tssr87214	transcription start site region 87214	1572 bp downstream
Tssr87215	transcription start site region 87215	1341 bp downstream
Tssr87216	transcription start site region 87216	1288 bp downstream
Tssr87217	transcription start site region 87217	1215 bp downstream
Tssr87218	transcription start site region 87218	915 bp downstream
Tssr87219	transcription start site region 87219	682 bp downstream
Tssr87220	transcription start site region 87220	594 bp downstream
Tssr87221	transcription start site region 87221	375 bp downstream
Tssr87222	transcription start site region 87222	326 bp downstream
Tssr91571	transcription start site region 91571	80 bp downstream
Tssr91572	transcription start site region 91572	601 bp downstream
Tssr91573	transcription start site region 91573	758 bp downstream
Tssr91574	transcription start site region 91574	988 bp downstream
Tssr91575	transcription start site region 91575	1039 bp downstream
Tssr91576	transcription start site region 91576	1124 bp downstream
Tssr91577	transcription start site region 91577	1581 bp downstream