rs252442866 SNP Detail

Summary

• ID
  rs252442866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68789264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGATCCT TAATGTGTGA
  CATTGTCTTC CTCCTACCAA TTGTCTTTAT CCTAAATTTA TTTTTTAATG AAGGGAAAAG
  ATTTTGGAGA GAGAGACAGA GACAGAGACA AAGGAGACAG AGATTCAGAA AGACCAGGAA
  CTTGAAAAGG TGACTGGTCA GTTAGATAAA TATTTGTCTG CCCTTCATGG ACACACATAA
  R
  ACCACACGGT CGCCACACCC CCGGCAAGTG TTTAGAGGAG GCAGATATGA ATCGAGGATG
  TCTCTGAGTT TCAGAAGTCT GCCTCTCCCA GCTGCAGTCC TAGAGGAAGC CTGTATTCAT
  AGATCCTCAA TACAGCACCA GCGGGACCCT AATTAATGAG TTTGTTTGTT CTTCTTGCCA
  GCTGGGTACA AAAAGCATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322996730	CHEV_9_68729789	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252442866					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68789264 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	196 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682079	regulatory region 682079	within coordinates
Rr682080	regulatory region 682080	1711 bp proximal
Tssr85829	transcription start site region 85829	866 bp upstream