rs252444308 SNP Detail

Summary

• ID
  rs252444308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156266291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cacgagaat tcaaagatgc ccctgcccct
  gcctcccacg tgctgagatc aaaggcatga gccaccaacc ctggctCATT TTAAGTAGAT
  TTTTAGAAAA AGagccagac ttgatgacac atgcctttaa ttaagcactt ggaaggcaga
  R
  gcaagcagat ttcagtgagt tcaaggccag ctttatctac atagtgagtt ttagggcagc
  cagagctaca taatagagaa atcctatctc aaaaaaaaaa aaAAAATGTA TAgggctgaa
  gagatggccc aggggttcag agcactggct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320072188	CHEV_1_158368852	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252444308					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156266291 () rs orientation: forward

Symbol	Name	Function Class
Rr13324	regulatory region 13324	1691 bp distal
Rr31351	regulatory region 31351	631 bp distal
Rr396421	regulatory region 396421	1106 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	974 bp upstream
Tssr14442	transcription start site region 14442	588 bp downstream