rs252471261 SNP Detail

Summary

• ID
  rs252471261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19278800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAAGAT ATTCAAGTTT
  CCAAATGTGT TAGACACAAT GAGCAAAATA TCAGAAACCA TTGTGGTAAA TAGTGGTGTT
  ATTCTTGTTC CACAATGATA CTTTTATAAG GTTGCATCAA TAGAGAAATA TAACTCAAAG
  TCAAAAATCT AGTGGTGTTT TTTTAATGCT CCCCTAAATA TACAAGAATA GGAAAACTGT
  Y
  TTTAAAATCT CAGTAATGGT TCTCCTAAAA GAAAAAAAAA AAAAACTATG TAGAAAATTT
  GGGGACTGAT GTGCGTGGTT TCTCATTGTC AATTATTAAA ACACTTTAGT TAGTGGCTGC
  ATTGATTCGC CATTTTCAAA ACAGATTTTT AATGTATCTA TTTATATTTC TCGTTTTGAA
  CCACTATATT CCCTTTAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348817489	MGP_WTSI_1_19198657	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252471261					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348817489	MGP_WTSI_1_19198657	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19278800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	1105 bp proximal
Rr408237	regulatory region 408237	686 bp distal
Rr408238	regulatory region 408238	177 bp proximal
Rr408239	regulatory region 408239	395 bp proximal
Tfap2b	transcription factor AP-2 beta	338 bp upstream
Tssr6030	transcription start site region 6030	364 bp upstream
Tssr6031	transcription start site region 6031	407 bp upstream
Tssr6032	transcription start site region 6032	422 bp upstream
Tssr6033	transcription start site region 6033	438 bp upstream
Tssr6034	transcription start site region 6034	462 bp upstream
Tssr6035	transcription start site region 6035	494 bp upstream
Tssr6036	transcription start site region 6036	518 bp upstream
Tssr6037	transcription start site region 6037	536 bp upstream
Tssr6038	transcription start site region 6038	564 bp upstream
Tssr6039	transcription start site region 6039	579 bp upstream