rs252471280 SNP Detail

Summary

• ID
  rs252471280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60226162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTATT TTCACTCTAG
  TACTTATCCT TTCTAATCTC CTTATCCCTG TCAGTATTCA TCCCCACTAT AAGTCCTTTC
  TCTACATTCA AAACTTTTTA TTTTGTGATC CACTTAGTTT AACCAGAGCC ATTCATATGT
  CCACGGGTGT ACAATGATAC TTTGAAGTAT GAGAGGCTCA CAAGAGCCTC ATCCATAGAC
  Y
  GTGATTCTCC TTCTATTATC AATCAGTAGC CACTAATTCC CCCAGGAAGG ACAGGAACCT
  ACTAATCCTT TACTCATCTG TAATTAACAA GCCCAGTTTA TAACAAGCTC AGTAAAGCTC
  AGTAAAAATC TGTGATTTCA TAATATAGCA TTTCATTGGC CTTTTCTTTA CCACCCAGCT
  TTTACATTCA TTTAACTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403586317	MGP_WTSI_X_58435731	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252471280					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403586317	MGP_WTSI_X_58435731	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60226162 () rs orientation: forward

Symbol	Name	Function Class
Cdr1	cerebellar degeneration related antigen 1	1449 bp downstream
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5627	transcription start site region 5627	1450 bp upstream
Tssr161076	transcription start site region 161076	1428 bp downstream
Tssr161077	transcription start site region 161077	687 bp upstream
Tssr161078	transcription start site region 161078	705 bp upstream
Tssr161079	transcription start site region 161079	732 bp upstream
Tssr161080	transcription start site region 161080	766 bp upstream
Tssr161081	transcription start site region 161081	901 bp upstream
Tssr161082	transcription start site region 161082	919 bp upstream
Tssr161083	transcription start site region 161083	996 bp upstream
Tssr161084	transcription start site region 161084	1121 bp upstream
Tssr161085	transcription start site region 161085	1249 bp upstream
Tssr161086	transcription start site region 161086	1312 bp upstream
Tssr161087	transcription start site region 161087	1334 bp upstream
Tssr161088	transcription start site region 161088	1360 bp upstream
Tssr161089	transcription start site region 161089	1383 bp upstream