rs252473624 SNP Detail

Summary

• ID
  rs252473624
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107147656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGACAGAG GGTGAGGTGG TATCTGTTGC
  TGAACTTTAA AGGTTAAAAT TCCCAATATG GAGACAGACA CTGCATCTGT GGTGTTGATG
  CTTCTCACAG ATACACAGGT GAGGCTGCTC TCTAATAAGC TCTGGACAAG CGCCtgtgag
  M
  cggttagtct ttgatgtcta attgattgga ttcagaattc ctatggcaac acacctctgg
  atacgtctat gagggtattt ccagcaaaaa gaaattgagg cagaaagatc caccatggct
  gtgagcatca tcataccatg agctacgggc                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864890	CHEV_3_107043258	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252473624					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107147656 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	1526 bp upstream
Prok1	prokineticin 1	633 bp upstream
Rr582947	regulatory region 582947	1184 bp proximal
Rr582948	regulatory region 582948	1537 bp proximal
Tssr31192	transcription start site region 31192	1449 bp upstream
Tssr31193	transcription start site region 31193	1520 bp upstream
Tssr31194	transcription start site region 31194	1575 bp upstream
Tssr35054	transcription start site region 35054	1633 bp upstream