rs252476730 SNP Detail

Summary

• ID
  rs252476730
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124733353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATAACA AATGGAGGCG
  GCGGCGGGAG GGGGGACCGG GAGGGGTGGG GGCGGGGAGC CGCGGGCCGG AACGGGGCGG
  CCCGGGCCGG CGGCAGCGGA CCTTACCTGC GAGCAGCTCG GGACGGCTGG CTGGCTGCGA
  GTGCGGTCGG GCTCCGGCGC CTCCCGGGGA CGGCGGCGGC CACTCCCCGC CCCTCCTTAC
  W
  GCGCGGCTTC AGTCGCTGCC GCGGCGGCGG CGGCGGCGGC CCCGGCCCCC CCGGAGGGCG
  GCCCCCATGC CCGGCTCCCC GCGCAGCCCC GATCGGCTTC TCGCGCTCCT CGCCCGCCCT
  CCCGCCCGGA ACGCGCCGCC CGCGCCCGCC CCCGCCGCAC CGCCCGCCTC CGCCCGCACT
  CGCGGTCCCG GCGAGGCCCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss369942281	MGP_WTSI_6_124706408	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs252476730					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369942281	MGP_WTSI_6_124706408	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124733353 () rs orientation: forward

Symbol	Name	Function Class
Atn1	atrophin 1	within coordinates
Cpgi17967	CpG island 17967	within coordinates
Gm45234	predicted gene 45234	369 bp upstream
Rr145725	regulatory region 145725	within coordinates
Rr380049	regulatory region 380049	1309 bp downstream
Tssr63141	transcription start site region 63141	27 bp upstream
Tssr63142	transcription start site region 63142	88 bp downstream
Tssr63143	transcription start site region 63143	309 bp downstream
Tssr63144	transcription start site region 63144	436 bp downstream
Tssr63145	transcription start site region 63145	459 bp downstream
Tssr63146	transcription start site region 63146	497 bp downstream
Tssr63147	transcription start site region 63147	572 bp downstream
Tssr63148	transcription start site region 63148	607 bp downstream
Tssr63149	transcription start site region 63149	630 bp downstream
Tssr63150	transcription start site region 63150	849 bp downstream