rs252480011 SNP Detail

Summary

• ID
  rs252480011
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTGTAC CTCTTATCCT
  CATCCTTGAA TCATGTTGGT GTTAATGAAA CACTTTACGC CTCTGCCAGC CTATCTTATG
  TGCAAAGGTG TGTGTGGTGG GGGCCTGGGG GGCAAGCATC CAAACTGACA GGCCGGAAAG
  TGTGGGAGGC GATCTGATAA ATAATGAAGC TGCCTGTTTC CTGGGAACGA TTAAGAGTGG
  T
  AGAGAGCCAT GATCTCTTTG GTGATAGGGA GTCCGGCTTG GGATGCAGCT GGGTTCAGTG
  GGTCATTTTC TAAATAAAAC AAAAAATTAG GATCGTGGCT TCCTAAGAAC AGGGATAGTA
  AAAAGAGCTT ACAGCTGACT CTTTAGGGAG CTGGAGAAAT GACCCAGCAC TCGAGAGCAC
  TTACTGCTCT TCCACAGGAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320509814	CHEV_2_132640318	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252480011					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	1044 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1559 bp upstream
Rr397334	regulatory region 397334	1356 bp upstream
Rr565537	regulatory region 565537	1462 bp proximal
Rr565538	regulatory region 565538	1570 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1555 bp upstream
Tssr20336	transcription start site region 20336	1566 bp upstream
Tssr20337	transcription start site region 20337	1587 bp upstream
Tssr26490	transcription start site region 26490	1396 bp downstream