rs252480171 SNP Detail

Summary

• ID
  rs252480171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124154934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGAAGT CAGGGGCTCC
  TCACAATCTC TGGAACAGCC TGGCGTGGAG TCGCTGCTTC CTGAACAGCA GGGGGGCCCC
  GGGGGAGGAG AAAAAGGAGC CCGATATTCT AGGCCCCAAT AGGACGGCCC GTGGAGGGCC
  AACATACAGA GATCTGGTGT GAGGTCAGGC CACCAAGTCC ACAGAGGGTG ATTGCCGGTT
  R
  TTGCCCACAC CGTTTCTCGG TCTCCATTAG TCACTTCCCA GGAGAGGTTA AAAACCTGGT
  GGGGGCTGTT TCCCAACGCA ACGGGGTTGA CCCCTCCGAG AATCAGAAGG ACAATTAGGG
  GGCCCCACGG GTTAACCTGA TTTTTAAAGG GTTTTGAGAG CGTTGTACTC TCCATGATGG
  TTTTATCGGG GGTGTGGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	ST/bJ
ss376343706	MGP_WTSI_8_125952095	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	ST/bJ
rs252480171					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376343706	MGP_WTSI_8_125952095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124154934 () rs orientation: forward

Symbol	Name	Function Class
Mela	melanoma antigen	within coordinates
Tssr2728	transcription start site region 2728	715 bp upstream
Tssr79965	transcription start site region 79965	215 bp upstream
Tssr83353	transcription start site region 83353	1456 bp upstream
Tssr83354	transcription start site region 83354	629 bp upstream
Tssr83355	transcription start site region 83355	536 bp upstream
Tssr83356	transcription start site region 83356	466 bp upstream
Tssr83357	transcription start site region 83357	347 bp upstream
Tssr83358	transcription start site region 83358	83 bp upstream
Tssr83359	transcription start site region 83359	770 bp downstream
Tssr83360	transcription start site region 83360	877 bp downstream
Tssr83361	transcription start site region 83361	1251 bp downstream
Tssr83362	transcription start site region 83362	1400 bp downstream