rs252489726 SNP Detail

Summary

• ID
  rs252489726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:28313448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCCCCAA ATATTGGTAG
  TGCTCCCAGT ATCACCCAAT CGCTGTCTGC ACAATTTCTT CTCTCAGCCT TGCAAGCCCA
  AAACCTTATG AAGGAGTCTT GTCTCCCATT CCCGTCTGAG CAGTACTTGT TCTCCCAATA
  TAATTTTCAC TATAGCTGAT AAGACTAGCG ATAAGTACTC TATCCTTCCA AGGTAAGATG
  Y
  TCTAATTAAA AAATTTTAAG CCTAAAACAT GTACATGAGC TAAGCATTTT TACAAGTGGG
  ATTGGGGCAC TATTCCTTTT TTTTGCTCAG TCCCTTGGAA ATGAAACAGG TAGGATGCCT
  TTGTATCCTT CGGCAAGTAA AGTAATAAAC ACGAAGAGCT TAATGCTTAT TTTTGAATTA
  CATTTCATTT TGGCAATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377028542	MGP_WTSI_9_28209737	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	T	C	T	T	C	C	C	T	C	C	C	T	C	T	C	C	T	C	C	C	T	C	T	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252489726					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	T	C	T	T	C	C	C	T	C	C	C	T	C	T	C	C	T	C	C	C	T	C	T	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377028542	MGP_WTSI_9_28209737	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:28313448 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21517	CpG island 21517	702 bp proximal
Opcml	opioid binding protein/cell adhesion molecule-like	within coordinates
Rr206121	regulatory region 206121	752 bp proximal
Tssr84179	transcription start site region 84179	1143 bp upstream
Tssr84180	transcription start site region 84180	1328 bp upstream
Tssr84181	transcription start site region 84181	1361 bp upstream
Tssr84182	transcription start site region 84182	1386 bp upstream