rs252494578 SNP Detail

Summary

• ID
  rs252494578
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143654110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTACTACT CAACCAATAG
  GACAGTTTAT CCTTCCTCGT GTTCCCAACG TTTTGGGGGA GTTTTTTTTT CCCTCCATTT
  TCATTTTGAT TTTTTCTAAG ATATTGTTTT TAACTGTTTT GTTAAAATGT GTACCCAAAA
  TATAGCAAAC CTTAATGTAG ATTTTGTGTA CTGTACATGG CTGAATATTT CGAGCATTGC
  S
  TAACATATGT TCAACTGTAC TTCGGGCATA CAGTTACGGA GTTGGAAATT TTAATGTGAA
  TAATCGGAAT GCTGGTCTGA AGAACTGAGA GTCAATCTAG AATAACATGT TGGTTTACGT
  TTAAGAGTAT ACAGAAATTG TTTTAACTGT GTAGATCACA GAGGAGCTGG GCAAAAGGAA
  GCATGATCTA GTGTGGTTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351733332	MGP_WTSI_1_145625502	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252494578					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351733332	MGP_WTSI_1_145625502	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143654110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi837	CpG island 837	312 bp distal
Gm25663	predicted gene, 25663	556 bp upstream
Gm29170	predicted gene 29170	within coordinates
Ro60	Ro60, Y RNA binding protein	1316 bp upstream
Rr396352	regulatory region 396352	998 bp downstream
Rr396353	regulatory region 396353	4 bp downstream
Rr419943	regulatory region 419943	1315 bp distal
Rr419944	regulatory region 419944	720 bp distal
Rr419945	regulatory region 419945	1207 bp distal
Rr419946	regulatory region 419946	11 bp distal
Tssr9196	transcription start site region 9196	1045 bp downstream
Tssr9197	transcription start site region 9197	1027 bp downstream
Tssr14094	transcription start site region 14094	1333 bp upstream
Uchl5	ubiquitin carboxyl-terminal esterase L5	within coordinates