rs252498256 SNP Detail

Summary

• ID
  rs252498256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142133394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCCCAT CACCCCCCAC
  ATCACCCTTG CTATACTCCC CTATACTTCC CACTATATCC TCCCCACTAC ACCCCTGCTA
  TATCCCCCCT GTCATCCTCC CCACCATACC CCTTGCCATA CCCCCCACCA TACTTCCCCT
  ATGGCCCCCA TACTCTCTGC TATACCCCCA CTATACCCTC CCTGCTATAC CCCCACTATA
  Y
  CCCCGCTATG TCCCCCACTA TACCCACACT ATACCGCCCC ACTACACCCC CATTATACCC
  CCACTATGCC CCTCCTGCCA TGCCCCCCAC TATGTCCCCC ATTATGCCCC CGCTATGCCC
  CCGCTATACC CCCACTATAA CTCCCTCTAT ATCCCCCGCT ATACCCCTAC TATACCTCCC
  ACTATACTTC CACTATACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss373453205	MGP_WTSI_7_149765562	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs252498256					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453205	MGP_WTSI_7_149765562	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142133394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	655 bp proximal
Gm56421	predicted gene, 56421	1739 bp downstream
H19	H19, imprinted maternally expressed transcript	1511 bp upstream
Rr27	regulatory region 27	491 bp proximal
Rr370601	regulatory region 370601	591 bp upstream
Rr658231	regulatory region 658231	1022 bp distal
Rr658232	regulatory region 658232	377 bp distal
Rr658233	regulatory region 658233	213 bp proximal
Rr658234	regulatory region 658234	553 bp proximal
Rr658235	regulatory region 658235	649 bp proximal
Tssr2461	transcription start site region 2461	1731 bp downstream
Tssr70223	transcription start site region 70223	1861 bp downstream
Tssr70224	transcription start site region 70224	1816 bp downstream
Tssr70225	transcription start site region 70225	1778 bp downstream
Tssr70226	transcription start site region 70226	1683 bp downstream
Tssr70227	transcription start site region 70227	1601 bp downstream
Tssr70228	transcription start site region 70228	1588 bp downstream
Tssr75834	transcription start site region 75834	1814 bp upstream
Tssr75835	transcription start site region 75835	1782 bp upstream
Tssr75836	transcription start site region 75836	1760 bp upstream
Tssr75837	transcription start site region 75837	1737 bp upstream
Tssr75838	transcription start site region 75838	1667 bp upstream
Tssr75839	transcription start site region 75839	1645 bp upstream
Tssr75840	transcription start site region 75840	1616 bp upstream
Tssr75841	transcription start site region 75841	1589 bp upstream
Tssr75842	transcription start site region 75842	1572 bp upstream
Tssr75843	transcription start site region 75843	1566 bp upstream
Tssr75844	transcription start site region 75844	1536 bp upstream
Tssr75845	transcription start site region 75845	1503 bp upstream