rs252499059 SNP Detail

Summary

• ID
  rs252499059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26493146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGGCAG TCCATGAGCT
  GAGTTACTGC GGTAAGGAGC TAACTGCTGC TGGGTGTGAT TGGTCGCCTG TTTATCTATG
  CAACCATTAG ACTCCAAACT CCAAACAGAT CGAAACCTGG GACCTTTTTT TTTTTTTTCA
  AATAACACCA TGAAGCGTCC CTCTTACAAA AACACAGCCC ATGATTTTAT CATTGAACAC
  R
  TTATAACAGA GACACCAAAG GCTGTAAAAT CAGTGTGAGA TGTCCTAGCC TCTGAAGTTC
  TTGAGTAAAA CCCCCTTCAC AGCATTACTA CTCTGCATCA ATCAGTCATG GGACACAAGG
  CATCAGCCTG TAACACTTAA CAAATGTCCA CTAGATCATC CCCTATTCTC CCAGCAGAGA
  GCATCTGCTT CACAAAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360806	MGP_WTSI_12_27128012	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252499059					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360806	MGP_WTSI_12_27128012	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26493146 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	975 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	594 bp upstream
Tssr112999	transcription start site region 112999	641 bp upstream
Tssr113000	transcription start site region 113000	765 bp upstream
Tssr113001	transcription start site region 113001	1239 bp upstream
Tssr113002	transcription start site region 113002	1263 bp upstream
Tssr113003	transcription start site region 113003	1338 bp upstream
Tssr113004	transcription start site region 113004	1398 bp upstream
Tssr113005	transcription start site region 113005	1424 bp upstream
Tssr113006	transcription start site region 113006	1787 bp upstream
Tssr113007	transcription start site region 113007	1871 bp upstream
Tssr115902	transcription start site region 115902	277 bp upstream
Tssr115903	transcription start site region 115903	42 bp downstream
Tssr115904	transcription start site region 115904	59 bp downstream
Tssr115905	transcription start site region 115905	364 bp downstream
Tssr115906	transcription start site region 115906	492 bp downstream
Tssr115907	transcription start site region 115907	547 bp downstream
Tssr115908	transcription start site region 115908	587 bp downstream
Tssr115909	transcription start site region 115909	673 bp downstream
Tssr115910	transcription start site region 115910	725 bp downstream
Tssr115911	transcription start site region 115911	775 bp downstream
Tssr115912	transcription start site region 115912	789 bp downstream
Tssr115913	transcription start site region 115913	824 bp downstream
Tssr115914	transcription start site region 115914	876 bp downstream
Tssr115915	transcription start site region 115915	905 bp downstream
Tssr115916	transcription start site region 115916	962 bp downstream
Tssr115917	transcription start site region 115917	1008 bp downstream
Tssr115918	transcription start site region 115918	1027 bp downstream
Tssr115919	transcription start site region 115919	1054 bp downstream
Tssr115920	transcription start site region 115920	1081 bp downstream
Tssr115921	transcription start site region 115921	1386 bp downstream
Tssr115922	transcription start site region 115922	1482 bp downstream
Tssr115923	transcription start site region 115923	1565 bp downstream
Tssr115924	transcription start site region 115924	1636 bp downstream
Tssr115925	transcription start site region 115925	1651 bp downstream
Tssr115926	transcription start site region 115926	2000 bp downstream