rs252507077 SNP Detail

Summary

• ID
  rs252507077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56837039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGTGCTG CTGAAGGTTG
  GGACATTTGG CTGTTTTGAG GGTCATGACT CCTAGACCTC TGACTCCAAA ACTCATAAAC
  TTTGACTCCC TATGAAGGAT AACAGCTGGT CGTGATGACA CACACGGGAG ACTGAGTGAG
  TGCCAGGCCA GCCTGTGCCA CATCTAGCAA GATCTTACCA AAAGTTAACC AAACAAACCG
  R
  GAGCTGAAAC AGCACTGTCA TGAATTGGAG GCTGGACTCC AGTCCCTTTC TTAAACAAAC
  AGACAAACGA GTGGTGGTGG ACACATTTAG TCCCAGAATT TGGGAGACAG AGGCAGGTGA
  ATCTCTCTGA GTTCTGGGCC AGCCAAAGAT ACATAGCAAG ACTGTCTCAA ATTAAAAATT
  GAAAGATCTT GAGCATGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377679375	MGP_WTSI_9_56777562	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252507077					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377679375	MGP_WTSI_9_56777562	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56837039 () rs orientation: forward

Symbol	Name	Function Class
4930442G15Rik	RIKEN cDNA 4930442G15 gene	1857 bp upstream
Cpgi21803	CpG island 21803	1062 bp distal
Gm70242	predicted gene, 70242	1625 bp downstream
Rr368760	regulatory region 368760	1234 bp downstream
Rr401388	regulatory region 401388	1487 bp downstream
Rr679548	regulatory region 679548	1395 bp distal
Rr679550	regulatory region 679550	1696 bp distal
Rr679551	regulatory region 679551	1538 bp distal
Rr679552	regulatory region 679552	894 bp distal
Rr679553	regulatory region 679553	1351 bp distal
Snx33	sorting nexin 33	1384 bp upstream
Tssr89746	transcription start site region 89746	1760 bp upstream
Tssr89747	transcription start site region 89747	1633 bp upstream
Tssr89748	transcription start site region 89748	1594 bp upstream
Tssr89749	transcription start site region 89749	1441 bp upstream
Tssr89750	transcription start site region 89750	1363 bp upstream