rs252515105 SNP Detail

Summary

• ID
  rs252515105
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10612267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAATTAA TTTGGCCATG
  ATGCTTTCTG TTGAATGTCT TTCTCCTCAA ATATTTGAGA TTAACAATGA AGATAGCATG
  GGACTATAAT TCTAGAATCC AGTAGGTGGA AACAGATTAT GAATTCTAGA CTAGCCTGGG
  CTACAGAGGG AGAACTTGTC ACTGCTCCTT AAAATTAATT TAAGCCGGGC GTGGTGGCAC
  W
  CGCCTTTAGT CCCAGCACTT GAGAGGCAGA GGCAGGTGAA TTTCTGAGTT CAAGGCCAGC
  CTGGCCTACA GAGTGAGTTC CAGGACAGCC AGGGCTACAC AGAGAAACCT TGTCTTGAAG
  AAACAAGGAA AAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA TCTGGGTTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325524307	CHEV_18_10612265	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252515105					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10612267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1619 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	1915 bp upstream
Rr533780	regulatory region 533780	1425 bp distal
Rr533782	regulatory region 533782	1825 bp distal
Tssr152431	transcription start site region 152431	1979 bp upstream
Tssr152432	transcription start site region 152432	1955 bp upstream
Tssr152433	transcription start site region 152433	1904 bp upstream