rs252527060 SNP Detail

Summary

• ID
  rs252527060
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72777833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGTAAT CTCTAATCCG
  CGCGTGCCGA TTGCTGGGGC TGCGAAATCT GTCCACTGCT CTCCGCGTGG TTCCAAGCTG
  AGGGCCCCGG CTGCCCAGGC CTCTAGGGCC AATGCCGCAA GCTTTGGGTT TCTTGGCCAG
  ACTGGTGGCG GCGGGGTCAC GGGGTGGGGG GGTGGGGATG CGGGTGGGGG GGGGGTGGGG
  T
  GGGGATAGGC TGAGCCTGTG GCTCTCGCCC TAGACCCAGG CCGAAGCTCT TTAGTGTTGG
  CCGTTTTCTG TCTCGCTGAC CCGGCTTTCA GGGAAAAAAA AATAATGTGT TAACGGGTTT
  GGGACCCGCT AAGTGCTGCC AGAGTTCGTA GTAGGCCTAT GGGTTCCAGC TCCGTAGATC
  CGGGATCTGT CTGAGCATCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	MA/MyJ	RIIIS/J	SM/J	SWR/J
ss389037643	MGP_WTSI_13_72767162	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	MA/MyJ	RIIIS/J	SM/J	SWR/J
rs252527060					SNP	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389037643	MGP_WTSI_13_72767162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72777833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5831	CpG island 5831	within coordinates
Cpgi5832	CpG island 5832	750 bp proximal
Gm20554	predicted gene, 20554	1150 bp upstream
Irx2	Iroquois homeobox 2	within coordinates
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	919 bp downstream
Tssr120306	transcription start site region 120306	889 bp downstream
Tssr120307	transcription start site region 120307	866 bp downstream
Tssr123170	transcription start site region 123170	1209 bp upstream
Tssr123171	transcription start site region 123171	1128 bp upstream
Tssr123172	transcription start site region 123172	1107 bp upstream