rs252532901 SNP Detail

Summary

• ID
  rs252532901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19430680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCTTGG AGCGCACCTC
  CTCCATGTGC TCACGCACCT CCTCTAGGCG GTCACGGGCC TGGTTGCCCA CTTCCTCCAG
  CCGCCCTCGG ATGCGGTCAC CAAAAGCCTG GGCGCGATCG CGCAGAGGCT GGGCGGCCCC
  AGCGCCTAGG TTGGCAGTGC GCTGGCGACC TTGCTCCACC AGAGGCCCCA GGCGCTCACG
  R
  ATGGCACTCA CACCGCGCTC GGCGCCCTCG CGTGCCCCTG CCTTGTACAC AGCTAGGCGC
  TTCTGCAGAT CCTCGGCATC CCGCATCAAG CGCTTGCGCA TCTTGCGCAG GTGTGTGGAG
  AGCCGCGCCC GTATCTCCTC TGTGCTCTGG CCCAGCATGG TGTGCACCTC GTTGCGGTAC
  TGCCCGAGTC GGTTGCGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754797	MGP_WTSI_7_20282104	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252532901					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754797	MGP_WTSI_7_20282104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19430680 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	within coordinates
Cpgi18507	CpG island 18507	within coordinates
Cpgi18508	CpG island 18508	1644 bp proximal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1016 bp proximal
Gm71725	predicted gene, 71725	363 bp upstream
Rr155346	regulatory region 155346	80 bp distal
Rr167194	regulatory region 167194	within coordinates
Tssr2112	transcription start site region 2112	294 bp downstream
Tssr2113	transcription start site region 2113	264 bp downstream
Tssr2114	transcription start site region 2114	138 bp downstream
Tssr2115	transcription start site region 2115	110 bp downstream
Tssr2116	transcription start site region 2116	40 bp downstream
Tssr2117	transcription start site region 2117	within coordinates
Tssr2118	transcription start site region 2118	76 bp upstream
Tssr2119	transcription start site region 2119	85 bp downstream
Tssr2120	transcription start site region 2120	148 bp upstream
Tssr2121	transcription start site region 2121	180 bp upstream
Tssr2122	transcription start site region 2122	900 bp downstream
Tssr64880	transcription start site region 64880	481 bp downstream
Tssr64881	transcription start site region 64881	418 bp downstream
Tssr64882	transcription start site region 64882	359 bp downstream
Tssr64883	transcription start site region 64883	342 bp downstream
Tssr64884	transcription start site region 64884	314 bp downstream
Tssr64885	transcription start site region 64885	236 bp downstream
Tssr64886	transcription start site region 64886	201 bp downstream
Tssr64887	transcription start site region 64887	183 bp downstream
Tssr64888	transcription start site region 64888	25 bp upstream
Tssr64889	transcription start site region 64889	119 bp upstream
Tssr64890	transcription start site region 64890	165 bp upstream
Tssr64891	transcription start site region 64891	188 bp upstream
Tssr64892	transcription start site region 64892	221 bp upstream
Tssr64893	transcription start site region 64893	256 bp upstream
Tssr64894	transcription start site region 64894	710 bp upstream
Tssr64895	transcription start site region 64895	806 bp upstream
Tssr64896	transcription start site region 64896	832 bp upstream
Tssr70973	transcription start site region 70973	426 bp upstream
Tssr70974	transcription start site region 70974	393 bp upstream
Tssr70975	transcription start site region 70975	368 bp upstream
Tssr70976	transcription start site region 70976	316 bp upstream
Tssr70977	transcription start site region 70977	295 bp upstream
Tssr70978	transcription start site region 70978	272 bp upstream
Tssr70979	transcription start site region 70979	264 bp upstream
Tssr70980	transcription start site region 70980	250 bp upstream
Tssr70981	transcription start site region 70981	226 bp upstream
Tssr70982	transcription start site region 70982	197 bp upstream
Tssr70983	transcription start site region 70983	176 bp upstream
Tssr70984	transcription start site region 70984	116 bp upstream
Tssr70985	transcription start site region 70985	81 bp upstream
Tssr70986	transcription start site region 70986	52 bp upstream
Tssr70987	transcription start site region 70987	7 bp upstream
Tssr70988	transcription start site region 70988	within coordinates
Tssr70989	transcription start site region 70989	39 bp downstream
Tssr70990	transcription start site region 70990	51 bp downstream
Tssr70991	transcription start site region 70991	96 bp downstream
Tssr70992	transcription start site region 70992	104 bp downstream
Tssr70993	transcription start site region 70993	113 bp downstream
Tssr70994	transcription start site region 70994	154 bp downstream
Tssr70995	transcription start site region 70995	159 bp downstream
Tssr70996	transcription start site region 70996	192 bp downstream
Tssr70997	transcription start site region 70997	226 bp downstream
Tssr70998	transcription start site region 70998	288 bp downstream
Tssr70999	transcription start site region 70999	306 bp downstream
Tssr71000	transcription start site region 71000	749 bp downstream
Tssr71001	transcription start site region 71001	779 bp downstream
Tssr71002	transcription start site region 71002	839 bp downstream
Tssr71003	transcription start site region 71003	857 bp downstream
Tssr71004	transcription start site region 71004	885 bp downstream
Tssr71005	transcription start site region 71005	1236 bp downstream
Tssr71006	transcription start site region 71006	1269 bp downstream
Tssr71007	transcription start site region 71007	1327 bp downstream
Tssr71008	transcription start site region 71008	1433 bp downstream
Tssr71009	transcription start site region 71009	1451 bp downstream
Tssr71010	transcription start site region 71010	1595 bp downstream
Tssr71011	transcription start site region 71011	1628 bp downstream
Tssr71012	transcription start site region 71012	1664 bp downstream