rs252533967 SNP Detail

Summary

• ID
  rs252533967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105189954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTGTTT AAAGCTTAAG
  GTACAAGGAT GGCAAAGTCT CTTTATCCAA GGCAAATGCT TATTTTCTCT TTGCAAGCTA
  GCCATGAAGG CTCCGTTTGC TGTCCCAGTT GCCCCCACAT TTAGACTTGG TTTCTGAAGA
  GCAAGAACAT CTTTGGAGCT ATCAAGCCAC TCCCAGGCCA CGGGAGAATG ATGCTGGGCT
  Y
  TGAGATAGAT GCTGTCTTCT ACTACTAGTG TATGGATTTG AAGTGGCACA GCAAAACAAG
  CAAGCAAACA AACAAACAAA AAACAAACAA ACAAAATCAA ACCACAAGTA GGACACAACA
  GGCAAACCTT TCACCTCTTG TCAGACCACT GAACGCTTTT TGGCTGGGAC CCTAACAGAA
  AGATGGGCCA TGTCCTGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389805728	MGP_WTSI_13_105843526	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252533967					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389805728	MGP_WTSI_13_105843526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105189954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6063	CpG island 6063	193 bp proximal
Rgs7bp	regulator of G-protein signalling 7 binding protein	within coordinates
Tssr123934	transcription start site region 123934	800 bp downstream
Tssr123935	transcription start site region 123935	923 bp downstream
Tssr123936	transcription start site region 123936	993 bp downstream
Tssr123937	transcription start site region 123937	1134 bp downstream
Tssr123938	transcription start site region 123938	1336 bp downstream
Tssr123939	transcription start site region 123939	1351 bp downstream
Tssr123940	transcription start site region 123940	1380 bp downstream
Tssr123941	transcription start site region 123941	1403 bp downstream
Tssr123942	transcription start site region 123942	1449 bp downstream